SWAN: sliding window analysis of nucleotide sequence variability
نویسندگان
چکیده
منابع مشابه
Analysis of Sliding Window Techniques for Exponentiation
The m-ary method for computing x E partitions the bits of the integer E into words of constant length, and then performs as many multiplications as there are nonzero words. Variable length partitioning strategies have been suggested to reduce the number of nonzero words, and thus, the total numb e r o f m ultiplications. Algorithms for exponentiation using such partitioning strategies are terme...
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Constrained coding is used widely in digital communication and storage systems. In this paper, we study a generalized sliding window constraint called the skip-sliding window. A skip-sliding window (SSW) code is defined in terms of the length L of a sliding window, skip length J , and cost constraint E in each sliding window. Each valid codeword of length L+kJ is determined by k+1 windows of le...
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Sorted Sliding Window Compression (SSWC) uses a new model (Sorted Sliding Window Model | SSWM) to encode strings e cient, which appear again while encoding a symbol sequence. The SSWM holds statistics of all strings up to certain length k in a sliding window of size n (the sliding window is de ned like in lz77). The compression program can use the SSWM to determine if the string of the next sym...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 1998
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/14.5.467